rs27571649 SNP Detail

Summary

• ID
  rs27571649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140841605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATA GCGCACAAGC CAGAGGAACC
  R
  AAGGCGGTGT GATCCCTGGC TGCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786981	NES09130462	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	A	A	A	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27571649					SNP	A	G	G	G	A	G	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786981	NES09130462	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140841605 () rs orientation: forward

Symbol	Name	Function Class
4921514A10Rik	RIKEN cDNA 4921514A10 gene	1366 bp upstream
Rr603650	regulatory region 603650	within coordinates
Rr603651	regulatory region 603651	1136 bp proximal
Spata21	spermatogenesis associated 21	1534 bp downstream
Szrd1	SUZ RNA binding domain containing 1	within coordinates
Tssr44296	transcription start site region 44296	608 bp upstream
Tssr44297	transcription start site region 44297	979 bp downstream
Tssr44298	transcription start site region 44298	1046 bp downstream
Tssr44299	transcription start site region 44299	1355 bp downstream