rs27571650 SNP Detail

Summary

• ID
  rs27571650
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140841445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCT GAGCTAGCAG CCAAGTTCCT
  Y
  CCTACCCTGG GGGTGGCCGG CCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786983	NES09130460	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C		T	T	T	T	C	T	T
ss45614924	mCV23727153	ABI	CRAMUS_MOUSE	f	SNP		C				C	T
ss147725839	ENSMUSSNP3139691	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27571650					SNP	T	C	C	T	C	C	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786983	NES09130460	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140841445 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4921514A10Rik	RIKEN cDNA 4921514A10 gene			1526 bp upstream
Rr603650	regulatory region 603650			within coordinates
Rr603651	regulatory region 603651			1296 bp proximal
Spata21	spermatogenesis associated 21			1374 bp downstream
Szrd1	SUZ RNA binding domain containing 1			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr44296	transcription start site region 44296			448 bp upstream
Tssr44297	transcription start site region 44297			1139 bp downstream
Tssr44298	transcription start site region 44298			1206 bp downstream
Tssr44299	transcription start site region 44299			1515 bp downstream