rs27572715 SNP Detail

Summary

• ID
  rs27572715
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134532001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCATGAC AGCCATGACT
  TCAGCTATTT TCTGTTTTAG GTCCTTGATT TCCTGGTCTT TCTGAAGAAT TTGCCCTGCA
  AGATCAAAGA CCTAGCATTA GTGAGGAGGG AGAGATCTGT GGTTCCCAAA CCAGCCTTAG
  CTCAGGACTC GGGAAGAGCG AGCAAGCTTC CTGCTACGTA CCCAACATCA GAGCACTTTT
  W
  GACACTGTGG CCCACCTGTT ACTCTTTGTC ATTTTACCTT TCTACCTATG GAAAATACTG
  ACCTGCTCTG AGCTTGTGGG GCTACAACAA AGTGGTGGTG ACCCAGCAGC CTGAGGGGTG
  GGGTTTTACA GCTCTGCTTC CCGAGCTGGG ATTCCCTTCT GGAAGATTGG GCTCTGAGTG
  TTAAACCAAG GAACATAGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37760139	NES09147114	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27572715					SNP	T	T	T	T	T	T	T	T	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37760139	NES09147114	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134532001 () rs orientation: forward

Symbol	Name	Function Class
Maco1	macoilin 1	within coordinates
Rr601837	regulatory region 601837	81 bp proximal