rs27572729 SNP Detail

Summary

• ID
  rs27572729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134529352 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACGCTCAGG CCATCCTGTA AATACCAAAC
  CCTCTAGAAT GGCAAGCATC GCTTTATGAC ATGTAATAAA TCAGAAATCC TAGGACATCG
  GGCCACTTTA GGAAAAGCAG ACAAGACAAC TGGTAATTAC TGCAGTGAAG ACCACTCCAG
  Y
  GAGAGCACCG TGGGCAGAAG AGTCACTCCT TCGGGGGAGG TGGGGAACCC TGCTTATGGT
  AGTTCAGGGT GGTGTGCCTA CAAACCTTAA TGGCCAAGAT TCAGATGCCT ATCTGGACAG
  GAAACAAGGA GAGAAGGCAA GATGCCAAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37760153	NES09147100	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		C	T	C		C
ss321349615	CHEV_4_134357956	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27572729					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37760153	NES09147100	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134529352 () rs orientation: forward

Symbol	Name	Function Class
Maco1	macoilin 1	718 bp downstream