rs27574122 SNP Detail

Summary

• ID
  rs27574122
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133740035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACCA GTTTATTAAG ACCAAGACCA
  W
  GACTCGCTCT CTCCTCTTCT CTAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37763054	NES09154988	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	A		T	T	T	A		T
ss147514461	ENSMUSSNP4488337	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					T
ss321344546	CHEV_4_133568639	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574122					SNP	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763054	NES09154988	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133740035 () rs orientation: forward

Symbol	Name	Function Class
Lin28a	lin-28 homolog A	within coordinates
Rr377233	regulatory region 377233	182 bp downstream
Tssr1330	transcription start site region 1330	289 bp upstream
Tssr43852	transcription start site region 43852	320 bp upstream
Tssr43853	transcription start site region 43853	294 bp upstream