rs27574257 SNP Detail

Summary

• ID
  rs27574257
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133693091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCC AGCTTTAAAA CTCTATGGTA
  M
  CAGCATGAGT GACCTATCAG GACAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37763192	NES09156658	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	C	C	A		C	C	C	C		C	C	C	C		C
ss45650954	mCV22578817	ABI	CRAMUS_MOUSE	f	SNP		C	A					C		C
ss147513034	ENSMUSSNP4551809	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							C
ss321344242	CHEV_4_133521695	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574257					SNP	C	C	A	A	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37763192	NES09156658	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133693091 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15020	CpG island 15020			1112 bp proximal
Hmgn2	high mobility group nucleosomal binding domain 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr398563	regulatory region 398563			1351 bp upstream
Rr601512	regulatory region 601512			1651 bp proximal
Tssr43836	transcription start site region 43836			1414 bp downstream
Tssr43837	transcription start site region 43837			1455 bp downstream
Tssr43838	transcription start site region 43838			1516 bp downstream