rs27574477 SNP Detail

Summary

• ID
  rs27574477
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132461378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTGAGCT TGGTTCCAAT
  GAGGTGACTG CATCTGAACC CCCATTTTCC TGGTGAAGAC ATGGAGGCCT TAAAGAGGTC
  GTTATGGTTT GAATCTGAAG TGCCCCCCCG CCCCCCCTCC CTTCATTTTG AATGTTTGTT
  TCCCAACCAC TGTAGCATTT TTAGGTAGTG GATTCCAGCT GGCAAAAGGA AACCTTTGAA
  S
  CTGGTTCTGG ATCCTGCCCA GTGGCGATAT GAGGGGCTCC TGATACATTG CCACAGTGCT
  TCGGCACCAT TAACTGCCAG GCCTTCACAG GTTGGTATAG CAATCACAGC ATTGCAAAAG
  TAATGTTGCC TTCTCGGGGT CTGCGAGCTT TCAGGGGCAG GGCGGGATTA GGACGCAGAA
  TGTTCACCTC ACTACGGGTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758120	NES09169543	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	G		G	C	C	C		C
ss321335986	CHEV_4_132289982	CHEVERUD	SCREENING_POP	f	SNP										C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574477					SNP	C	C	C	C	C	G	C	C	G	C	G	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758120	NES09169543	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132461378 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	1434 bp distal
Cpgi14970	CpG island 14970	281 bp distal
Gm69628	predicted gene, 69628	913 bp upstream
Rr398540	regulatory region 398540	1210 bp downstream
Rr601049	regulatory region 601049	1612 bp distal
Rr601050	regulatory region 601050	1527 bp distal
Rr601051	regulatory region 601051	1120 bp distal
Rr601052	regulatory region 601052	1805 bp proximal
Rr601053	regulatory region 601053	1891 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr43696	transcription start site region 43696	1629 bp upstream
Tssr43697	transcription start site region 43697	1509 bp upstream
Tssr43698	transcription start site region 43698	1481 bp upstream
Tssr43699	transcription start site region 43699	758 bp downstream
Tssr43700	transcription start site region 43700	770 bp downstream
Xkr8	X-linked Kx blood group related 8	1521 bp upstream