rs27574478 SNP Detail

Summary

• ID
  rs27574478
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132461326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCAACTT CTCCCCAGGC
  GCTCTAAATC GATCAAACAG CCGCTGTTTG TTACCCTGAG CTTGGTTCCA ATGAGGTGAC
  TGCATCTGAA CCCCCATTTT CCTGGTGAAG ACATGGAGGC CTTAAAGAGG TCGTTATGGT
  TTGAATCTGA AGTGCCCCCC CGCCCCCCCT CCCTTCATTT TGAATGTTTG TTTCCCAACC
  R
  CTGTAGCATT TTTAGGTAGT GGATTCCAGC TGGCAAAAGG AAACCTTTGA ACCTGGTTCT
  GGATCCTGCC CAGTGGCGAT ATGAGGGGCT CCTGATACAT TGCCACAGTG CTTCGGCACC
  ATTAACTGCC AGGCCTTCAC AGGTTGGTAT AGCAATCACA GCATTGCAAA AGTAATGTTG
  CCTTCTCGGG GTCTGCGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758121	NES09169542	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G		G	A	A	A		A
ss321335985	CHEV_4_132289930	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574478					SNP	A	A	A	A	A	A	A	A	G	A	G	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758121	NES09169542	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132461326 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	1382 bp distal
Cpgi14970	CpG island 14970	229 bp distal
Gm69628	predicted gene, 69628	965 bp upstream
Rr398540	regulatory region 398540	1158 bp downstream
Rr601049	regulatory region 601049	1560 bp distal
Rr601050	regulatory region 601050	1475 bp distal
Rr601051	regulatory region 601051	1068 bp distal
Rr601052	regulatory region 601052	1857 bp proximal
Rr601053	regulatory region 601053	1943 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr43696	transcription start site region 43696	1577 bp upstream
Tssr43697	transcription start site region 43697	1457 bp upstream
Tssr43698	transcription start site region 43698	1429 bp upstream
Tssr43699	transcription start site region 43699	810 bp downstream
Tssr43700	transcription start site region 43700	822 bp downstream
Xkr8	X-linked Kx blood group related 8	1469 bp upstream