rs27574479 SNP Detail

Summary

• ID
  rs27574479
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132461323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAACCCAA CTTCTCCCCA
  GGCGCTCTAA ATCGATCAAA CAGCCGCTGT TTGTTACCCT GAGCTTGGTT CCAATGAGGT
  GACTGCATCT GAACCCCCAT TTTCCTGGTG AAGACATGGA GGCCTTAAAG AGGTCGTTAT
  GGTTTGAATC TGAAGTGCCC CCCCGCCCCC CCTCCCTTCA TTTTGAATGT TTGTTTCCCA
  W
  CCACTGTAGC ATTTTTAGGT AGTGGATTCC AGCTGGCAAA AGGAAACCTT TGAACCTGGT
  TCTGGATCCT GCCCAGTGGC GATATGAGGG GCTCCTGATA CATTGCCACA GTGCTTCGGC
  ACCATTAACT GCCAGGCCTT CACAGGTTGG TATAGCAATC ACAGCATTGC AAAAGTAATG
  TTGCCTTCTC GGGGTCTGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37758122	NES09169541	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27574479					SNP	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758122	NES09169541	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132461323 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	1379 bp distal
Cpgi14970	CpG island 14970	226 bp distal
Gm69628	predicted gene, 69628	968 bp upstream
Rr398540	regulatory region 398540	1155 bp downstream
Rr601049	regulatory region 601049	1557 bp distal
Rr601050	regulatory region 601050	1472 bp distal
Rr601051	regulatory region 601051	1065 bp distal
Rr601052	regulatory region 601052	1860 bp proximal
Rr601053	regulatory region 601053	1946 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr43696	transcription start site region 43696	1574 bp upstream
Tssr43697	transcription start site region 43697	1454 bp upstream
Tssr43698	transcription start site region 43698	1426 bp upstream
Tssr43699	transcription start site region 43699	813 bp downstream
Tssr43700	transcription start site region 43700	825 bp downstream
Xkr8	X-linked Kx blood group related 8	1466 bp upstream