rs27574480 SNP Detail

Summary

• ID
  rs27574480
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132461184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCCGTC AGGCGGTACT
  CCTGCTCCCA CCGTGGGGTC TCTTGTACAT TCGCCTGCCT CAGGTTCAAG AAGTAAGTCA
  CCAAGTCCTG GATTAGAGGC GCAGGGTATG TCAGCAACGA GCAGTTGATT CGTTCTGCCC
  ACAACCCAAC TTCTCCCCAG GCGCTCTAAA TCGATCAAAC AGCCGCTGTT TGTTACCCTG
  M
  GCTTGGTTCC AATGAGGTGA CTGCATCTGA ACCCCCATTT TCCTGGTGAA GACATGGAGG
  CCTTAAAGAG GTCGTTATGG TTTGAATCTG AAGTGCCCCC CCGCCCCCCC TCCCTTCATT
  TTGAATGTTT GTTTCCCAAC CACTGTAGCA TTTTTAGGTA GTGGATTCCA GCTGGCAAAA
  GGAAACCTTT GAACCTGGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758123	NES09169540	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	C		C	A	A	A		A
ss321335984	CHEV_4_132289788	CHEVERUD	SCREENING_POP	f	SNP										A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574480					SNP	A	A	A	A	A	C	A	A	C	A	C	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758123	NES09169540	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132461184 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	1240 bp distal
Cpgi14970	CpG island 14970	87 bp distal
Gm69628	predicted gene, 69628	1107 bp upstream
Rr398540	regulatory region 398540	1016 bp downstream
Rr601049	regulatory region 601049	1418 bp distal
Rr601050	regulatory region 601050	1333 bp distal
Rr601051	regulatory region 601051	926 bp distal
Rr601052	regulatory region 601052	1999 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr43696	transcription start site region 43696	1435 bp upstream
Tssr43697	transcription start site region 43697	1315 bp upstream
Tssr43698	transcription start site region 43698	1287 bp upstream
Tssr43699	transcription start site region 43699	952 bp downstream
Tssr43700	transcription start site region 43700	964 bp downstream
Xkr8	X-linked Kx blood group related 8	1327 bp upstream