rs27574481 SNP Detail

Summary

• ID
  rs27574481
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132461146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGCATGG AGCTGACGCT
  GGCATCCGGC ACCTGGTAGG CCTCCGTCAG GCGGTACTCC TGCTCCCACC GTGGGGTCTC
  TTGTACATTC GCCTGCCTCA GGTTCAAGAA GTAAGTCACC AAGTCCTGGA TTAGAGGCGC
  AGGGTATGTC AGCAACGAGC AGTTGATTCG TTCTGCCCAC AACCCAACTT CTCCCCAGGC
  K
  CTCTAAATCG ATCAAACAGC CGCTGTTTGT TACCCTGAGC TTGGTTCCAA TGAGGTGACT
  GCATCTGAAC CCCCATTTTC CTGGTGAAGA CATGGAGGCC TTAAAGAGGT CGTTATGGTT
  TGAATCTGAA GTGCCCCCCC GCCCCCCCTC CCTTCATTTT GAATGTTTGT TTCCCAACCA
  CTGTAGCATT TTTAGGTAGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758124	NES09169539	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T		T	G	G	G		G
ss321335983	CHEV_4_132289750	CHEVERUD	SCREENING_POP	f	SNP										G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574481					SNP	G	G	G	G	G	G	G	G	T	G	T	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758124	NES09169539	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132461146 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	1202 bp distal
Cpgi14970	CpG island 14970	49 bp distal
Gm69628	predicted gene, 69628	1145 bp upstream
Rr398540	regulatory region 398540	978 bp downstream
Rr601049	regulatory region 601049	1380 bp distal
Rr601050	regulatory region 601050	1295 bp distal
Rr601051	regulatory region 601051	888 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr39417	transcription start site region 39417	1992 bp downstream
Tssr43696	transcription start site region 43696	1397 bp upstream
Tssr43697	transcription start site region 43697	1277 bp upstream
Tssr43698	transcription start site region 43698	1249 bp upstream
Tssr43699	transcription start site region 43699	990 bp downstream
Tssr43700	transcription start site region 43700	1002 bp downstream
Xkr8	X-linked Kx blood group related 8	1289 bp upstream