rs27574487 SNP Detail

Summary

• ID
  rs27574487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132460719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAAACTT GGAAGAAATT
  GTGCTTCTTA GCGCCCTCTC TGGTGAATCC AGGTGTCCCA TCCCACTTTA CTCTCCGCGG
  GGGGAGACTG ATGGCAAAAG TTCATCTCTC TCCATTGGGT AACGTTGCCC AATTTTACCA
  GGAGAAAGAT GAACCAAGTC AGTGGGTGGG CTGGCAGTGC CTACAGTCAT AACACCTCCA
  R
  TACGTGCAGG CTTGGCAGCA GAGTCAGTAT GAGCAGGAAA CCAGGCACCA GCTTGGCACC
  AAGACCATGC AAGCAGGTAG CATAAGTGTT GAAAGCCACG TGTTGTATAG CACAAACGTG
  CTCGATGCGG CAGCTGTCCT CACAGGTCAA ATGGTTGTAG CTGACCGAGT TATAGACGTA
  ATAACGTTGC AGGATGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758130	NES09169531	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	A	G	G	A		A		G	G	G		G
ss147477661	ENSMUSSNP6572937	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G											A
ss321335978	CHEV_4_132289323	CHEVERUD	SCREENING_POP	f	SNP												G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574487					SNP	G	G	G	G	G	G	G	A	G	G	A	G	A	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758130	NES09169531	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132460719 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	775 bp distal
Cpgi14970	CpG island 14970	49 bp proximal
Gm69628	predicted gene, 69628	1572 bp upstream
Rr398540	regulatory region 398540	551 bp downstream
Rr601049	regulatory region 601049	953 bp distal
Rr601050	regulatory region 601050	868 bp distal
Rr601051	regulatory region 601051	461 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr39417	transcription start site region 39417	1565 bp downstream
Tssr43695	transcription start site region 43695	1687 bp upstream
Tssr43696	transcription start site region 43696	970 bp upstream
Tssr43697	transcription start site region 43697	850 bp upstream
Tssr43698	transcription start site region 43698	822 bp upstream
Tssr43699	transcription start site region 43699	1417 bp downstream
Tssr43700	transcription start site region 43700	1429 bp downstream
Xkr8	X-linked Kx blood group related 8	862 bp upstream