rs27574488 SNP Detail

Summary

• ID
  rs27574488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132460699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGTTTT GTGGATAAAA
  CATGAAACTT GGAAGAAATT GTGCTTCTTA GCGCCCTCTC TGGTGAATCC AGGTGTCCCA
  TCCCACTTTA CTCTCCGCGG GGGGAGACTG ATGGCAAAAG TTCATCTCTC TCCATTGGGT
  AACGTTGCCC AATTTTACCA GGAGAAAGAT GAACCAAGTC AGTGGGTGGG CTGGCAGTGC
  Y
  TACAGTCATA ACACCTCCAG TACGTGCAGG CTTGGCAGCA GAGTCAGTAT GAGCAGGAAA
  CCAGGCACCA GCTTGGCACC AAGACCATGC AAGCAGGTAG CATAAGTGTT GAAAGCCACG
  TGTTGTATAG CACAAACGTG CTCGATGCGG CAGCTGTCCT CACAGGTCAA ATGGTTGTAG
  CTGACCGAGT TATAGACGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37758131	NES09169530	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27574488					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758131	NES09169530	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132460699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	755 bp distal
Cpgi14970	CpG island 14970	69 bp proximal
Gm69628	predicted gene, 69628	1592 bp upstream
Rr398540	regulatory region 398540	531 bp downstream
Rr601049	regulatory region 601049	933 bp distal
Rr601050	regulatory region 601050	848 bp distal
Rr601051	regulatory region 601051	441 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr39417	transcription start site region 39417	1545 bp downstream
Tssr43695	transcription start site region 43695	1667 bp upstream
Tssr43696	transcription start site region 43696	950 bp upstream
Tssr43697	transcription start site region 43697	830 bp upstream
Tssr43698	transcription start site region 43698	802 bp upstream
Tssr43699	transcription start site region 43699	1437 bp downstream
Tssr43700	transcription start site region 43700	1449 bp downstream
Xkr8	X-linked Kx blood group related 8	842 bp upstream