rs27574490 SNP Detail

Summary

• ID
  rs27574490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132460566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTC TTAGCGCCCT CTCTGGTGAA
  Y
  CCAGGTGTCC CATCCCACTT TACTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758133	NES09169528	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	C		C		T	T	T		T
ss147477646	ENSMUSSNP5064864	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T					C
ss321335975	CHEV_4_132289170	CHEVERUD	SCREENING_POP	f	SNP												T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574490					SNP	T	T	T	T	T	T	T	C	T	T	C	T	C	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758133	NES09169528	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132460566 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	622 bp distal
Cpgi14970	CpG island 14970	202 bp proximal
Gm69628	predicted gene, 69628	1725 bp upstream
Rr398540	regulatory region 398540	398 bp downstream
Rr601049	regulatory region 601049	800 bp distal
Rr601050	regulatory region 601050	715 bp distal
Rr601051	regulatory region 601051	308 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr39417	transcription start site region 39417	1412 bp downstream
Tssr43695	transcription start site region 43695	1534 bp upstream
Tssr43696	transcription start site region 43696	817 bp upstream
Tssr43697	transcription start site region 43697	697 bp upstream
Tssr43698	transcription start site region 43698	669 bp upstream
Tssr43699	transcription start site region 43699	1570 bp downstream
Tssr43700	transcription start site region 43700	1582 bp downstream
Xkr8	X-linked Kx blood group related 8	709 bp upstream