rs27574492 SNP Detail

Summary

• ID
  rs27574492
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132460413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT CTCCAAGGCC CATCTTCCCG
  Y
  CGGCTCACTT CACTGTGGTG ATCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758135	NES09169526	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	C		C		T	T	T		T
ss147477633	ENSMUSSNP978889	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T											C
ss321335972	CHEV_4_132289017	CHEVERUD	SCREENING_POP	f	SNP												T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574492					SNP	T	T	T	T	T	T	T	C	T	T	C	T	C	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758135	NES09169526	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132460413 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	469 bp distal
Cpgi14970	CpG island 14970	355 bp proximal
Gm69628	predicted gene, 69628	1878 bp upstream
Rr398540	regulatory region 398540	245 bp downstream
Rr601049	regulatory region 601049	647 bp distal
Rr601050	regulatory region 601050	562 bp distal
Rr601051	regulatory region 601051	155 bp distal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	within coordinates
Tssr39417	transcription start site region 39417	1259 bp downstream
Tssr43695	transcription start site region 43695	1381 bp upstream
Tssr43696	transcription start site region 43696	664 bp upstream
Tssr43697	transcription start site region 43697	544 bp upstream
Tssr43698	transcription start site region 43698	516 bp upstream
Tssr43699	transcription start site region 43699	1723 bp downstream
Tssr43700	transcription start site region 43700	1735 bp downstream
Xkr8	X-linked Kx blood group related 8	556 bp upstream