rs27574493 SNP Detail

Summary

• ID
  rs27574493
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132460207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    agacagggt ttctctgaat agccctggct
  gtcctgaaac tcactctgta gaccaggctg gcctcgaact cagaaatccg cctgcctctg
  cctcccaagt gctgggattc caccaccccc ggctTGAATT CTGCTTTTGA GTCTCAAGGA
  W
  ACAAGAGTGG CTATTAAGAA AGACTAGAGC CTTAGAGTTA CCGGCCGCAG CTGTGATCCC
  TCACGGTTGC ACTGTTGCAA AACCAAATCA AAAAAGTCTT TTATTTAAAA GTACTAAGGG
  GTTTTGCACA CCACGTACGT TCCCAGTTCA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758136	NES09169525	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A		T	A	A	A		A
ss321335969	CHEV_4_132288811	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574493					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758136	NES09169525	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132460207 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	263 bp distal
Cpgi14970	CpG island 14970	561 bp proximal
Rr398540	regulatory region 398540	39 bp downstream
Rr601049	regulatory region 601049	441 bp distal
Rr601050	regulatory region 601050	356 bp distal
Rr601051	regulatory region 601051	within coordinates
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	70 bp downstream
Tssr39417	transcription start site region 39417	1053 bp downstream
Tssr43695	transcription start site region 43695	1175 bp upstream
Tssr43696	transcription start site region 43696	458 bp upstream
Tssr43697	transcription start site region 43697	338 bp upstream
Tssr43698	transcription start site region 43698	310 bp upstream
Tssr43699	transcription start site region 43699	1929 bp downstream
Tssr43700	transcription start site region 43700	1941 bp downstream
Xkr8	X-linked Kx blood group related 8	350 bp upstream