rs27574494 SNP Detail

Summary

• ID
  rs27574494
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132460003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGGGGTGGAG CGAGCCCGCG GCCCCGCCCC TACACTGGCC
  CCACCGCCCA GACCCCGCCC CCAGCCTGCC CTGTGCAGAG CTAGGCCTCT ACTGGTTTGG
  W
  TTCTGCTTTT TGTTTTGTTT TTCTTTTTTG TTTGTTTTTT GTTTTTGTTT TGCGAGACAG
  GGTTTCTCTG AATAGCCCTG GCTGTCCTGA AACTCACTCT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37758137	NES09169581	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	T	T	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27574494					SNP	A	T	A	A	T	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758137	NES09169581	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132460003 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	59 bp distal
Cpgi14970	CpG island 14970	765 bp proximal
Rr398540	regulatory region 398540	within coordinates
Rr601049	regulatory region 601049	237 bp distal
Rr601050	regulatory region 601050	152 bp distal
Rr601051	regulatory region 601051	within coordinates
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	274 bp downstream
Tssr39417	transcription start site region 39417	849 bp downstream
Tssr43695	transcription start site region 43695	971 bp upstream
Tssr43696	transcription start site region 43696	254 bp upstream
Tssr43697	transcription start site region 43697	134 bp upstream
Tssr43698	transcription start site region 43698	106 bp upstream
Xkr8	X-linked Kx blood group related 8	146 bp upstream