rs27574497 SNP Detail

Summary

• ID
  rs27574497
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132459564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACCCTGA TGTTCCCTTC
  CTCTGTTCCT GGCCCTGTGT TTTCATCTCC GCCCAAGGAA AGAAGACTGA ACTGGTTCTG
  ATGGCTGTCA ACCCACTTTT TCAAAGGGCC GGGCACTCAC CTATACAGGT AGCCGAGCTG
  CAGCAGGTGC AGCAGAGCCA GGAAAGGACG CGAGAGCTGC GAATGGTGCA GCTCGGTGGG
  R
  TCAGCTGTCA GCCAGAGCCA GCTGAAGAGC TGCAGCAGCA CCGAAGCTTG GCCCAGCAGG
  ACCAGTACCA GCGCGGCCCA CAGATAACGG CCAAGGAGCA CGTACTGGAC AACGGCCCAC
  AGGTCAGCGA CCAGATCCAG CAGGAAAGAC AAGATACTCA CCAGGCCTAC GACCACGTCT
  AAGGCCACAT GGTGGTGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37758140	NES09169578	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27574497					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758140	NES09169578	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132459564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	within coordinates
Cpgi14970	CpG island 14970	1204 bp proximal
Rr398540	regulatory region 398540	304 bp upstream
Rr601049	regulatory region 601049	181 bp proximal
Rr601050	regulatory region 601050	266 bp proximal
Rr601051	regulatory region 601051	283 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	713 bp downstream
Tssr39417	transcription start site region 39417	410 bp downstream
Tssr43695	transcription start site region 43695	532 bp upstream
Tssr43696	transcription start site region 43696	174 bp downstream
Tssr43697	transcription start site region 43697	261 bp downstream
Tssr43698	transcription start site region 43698	312 bp downstream
Xkr8	X-linked Kx blood group related 8	within coordinates