rs27574499 SNP Detail

Summary

• ID
  rs27574499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132459439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACTCCTG GCTGACTCCG
  GGGACACGGA TGAGTCAAGC CGGACCCTCT TCAGTCCTTG ACGGGGAAGC AAACGTTCGC
  AGAAGACAGA AATGAACAAG AAAGGTGAGG GGCATCTCTG ACTCCAAGAC CCTGATGTTC
  CCTTCCTCTG TTCCTGGCCC TGTGTTTTCA TCTCCGCCCA AGGAAAGAAG ACTGAACTGG
  Y
  TCTGATGGCT GTCAACCCAC TTTTTCAAAG GGCCGGGCAC TCACCTATAC AGGTAGCCGA
  GCTGCAGCAG GTGCAGCAGA GCCAGGAAAG GACGCGAGAG CTGCGAATGG TGCAGCTCGG
  TGGGATCAGC TGTCAGCCAG AGCCAGCTGA AGAGCTGCAG CAGCACCGAA GCTTGGCCCA
  GCAGGACCAG TACCAGCGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758142	NES09169576	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C		C	T	T	T		T
ss321335964	CHEV_4_132288043	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574499					SNP	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758142	NES09169576	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132459439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	73 bp proximal
Cpgi14970	CpG island 14970	1329 bp proximal
Rr398540	regulatory region 398540	429 bp upstream
Rr601049	regulatory region 601049	306 bp proximal
Rr601050	regulatory region 601050	391 bp proximal
Rr601051	regulatory region 601051	408 bp proximal
Smpdl3b	sphingomyelin phosphodiesterase, acid-like 3B	838 bp downstream
Tssr39417	transcription start site region 39417	285 bp downstream
Tssr43695	transcription start site region 43695	407 bp upstream
Tssr43696	transcription start site region 43696	299 bp downstream
Tssr43697	transcription start site region 43697	386 bp downstream
Tssr43698	transcription start site region 43698	437 bp downstream
Xkr8	X-linked Kx blood group related 8	within coordinates