rs27574513 SNP Detail

Summary

• ID
  rs27574513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132457996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCCTCC TTAATAAATA
  AAATAAGAAA TGGAAAGCAA TTGAGAAATA CACCTGACAC TGACCTCTGG TTTCTGCATG
  TACCTGAAAA TGCACACAAA CTTGTACATA TACACATGCA CACAAGACCC TGTACTTTAT
  ATGCATGCAA TTCCCCACAT TTCATCTTCC CCTAACTCCC AAGGATAGAC ACATTTATTC
  Y
  GCCCAGTGCT CGGATGAGAA CCAACGAATG ATGGTTTGAG TCACTGTTCC AAGCTCATGC
  AGCTTGAATC CAGACCAGCT GCCTATCACT CAGGCACCCT CTTTTTTTTT TTTTTTTCCC
  CCTAAGAGTG AGAACACCTG CAGAGGAGAG AAGAGTCGGC AAAAGTGACA GCCCTGGGCC
  CAGCACTCAC ACTGGTAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37758156	NES09169632	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T		C	C	C		C
ss321335948	CHEV_4_132286600	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27574513					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37758156	NES09169632	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132457996 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14969	CpG island 14969	1516 bp proximal
Rr398540	regulatory region 398540	1872 bp upstream
Rr601049	regulatory region 601049	1749 bp proximal
Rr601050	regulatory region 601050	1834 bp proximal
Rr601051	regulatory region 601051	1851 bp proximal
Tssr39417	transcription start site region 39417	1141 bp upstream
Tssr43695	transcription start site region 43695	1025 bp downstream
Tssr43696	transcription start site region 43696	1742 bp downstream
Tssr43697	transcription start site region 43697	1829 bp downstream
Tssr43698	transcription start site region 43698	1880 bp downstream
Xkr8	X-linked Kx blood group related 8	within coordinates