rs27575013 SNP Detail

Summary

• ID
  rs27575013
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138477703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGT GCCTTTAGCC TCACCGGGCC
  R
  TATCTCCCCA CAAGCATAGG GGTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37767038	NES09131140	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G	A		G	G	A		A
ss147656120	ENSMUSSNP1425713	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					A
ss321376746	CHEV_4_138306307	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27575013					SNP	G	G	G	G	G	A	G	A	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767038	NES09131140	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138477703 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2f	phospholipase A2, group IIF	139 bp downstream
Rr603012	regulatory region 603012	1284 bp distal
Rr603013	regulatory region 603013	1516 bp distal