rs27575022 SNP Detail

Summary

• ID
  rs27575022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138476161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGG TGAATAGCAC CAGGTGTGAC
  Y
  TATACTGACC ACCAGGTGTC ACCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37767047	NES09131203	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	C	T		C	T	T	T		C	C	T	T		T
ss45669406	mCV23711533	ABI	CRAMUS_MOUSE	f	SNP	C	C					C		T
ss147656026	ENSMUSSNP525998	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss321376728	CHEV_4_138304765	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27575022					SNP	C	C	T	T	C	T	C	C	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767047	NES09131203	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138476161 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2f	phospholipase A2, group IIF	1681 bp downstream
Rr603010	regulatory region 603010	610 bp distal
Rr603011	regulatory region 603011	851 bp distal
Rr603012	regulatory region 603012	within coordinates
Rr603013	regulatory region 603013	5 bp proximal