rs27575023 SNP Detail

Summary

• ID
  rs27575023
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138476129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACCCC ACTGTAGTTC CACAGCAGAG
  R
  AGCCAATGTG GTGAATAGCA CCAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37767048	NES09131201	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G	A		G	A	A	A		G	G	A	A		A
ss45593808	mCV23711532	ABI	CRAMUS_MOUSE	f	SNP	G	G					G		A
ss147656021	ENSMUSSNP108582	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
ss321376727	CHEV_4_138304733	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27575023					SNP	G	G	A	A	G	A	G	G	A	A	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37767048	NES09131201	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138476129 () rs orientation: forward

Symbol	Name	Function Class
Pla2g2f	phospholipase A2, group IIF	1713 bp downstream
Rr603010	regulatory region 603010	578 bp distal
Rr603011	regulatory region 603011	819 bp distal
Rr603012	regulatory region 603012	within coordinates
Rr603013	regulatory region 603013	37 bp proximal