rs27575432 SNP Detail

Summary

• ID
  rs27575432
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133273621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAC AAGCCGCAGT TAAGACTCAG
  R
  AAGAAAGCAC TCACCAAAGG GTCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
ss37755185	NES09167825	PERLEGEN	MM_PANEL2	f	SNP			A		A	G			A
ss45582291	mCV24222140	ABI	CRAMUS_MOUSE	f	SNP	A	A		G
ss147498260	ENSMUSSNP1457995	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321341395	CHEV_4_133102225	CHEVERUD	SCREENING_POP	f	SNP							A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
rs27575432					SNP	A	A	A	G	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37755185	NES09167825	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133273621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15007	CpG island 15007	42 bp distal
Nudc	nudC nuclear distribution protein	314 bp upstream
Rr398556	regulatory region 398556	61 bp downstream
Rr601358	regulatory region 601358	within coordinates
Tssr43767	transcription start site region 43767	682 bp upstream
Tssr43768	transcription start site region 43768	299 bp upstream