rs27575433 SNP Detail

Summary

• ID
  rs27575433
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:133272784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATT GATAGGCAGG CTCCACTTTG
  R
  GTAAGATGCA GATCATATCG AGAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	WSB/EiJ
ss37755186	NES09167824	PERLEGEN	MM_PANEL2	f	SNP				A	G		G	A
ss45614409	mCV24222149	ABI	CRAMUS_MOUSE	f	SNP	A		A			G
ss147498245	ENSMUSSNP4764510	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	KK/HlJ	WSB/EiJ
rs27575433					SNP	A	A	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37755186	NES09167824	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133272784 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15007	CpG island 15007	within coordinates
Nudc	nudC nuclear distribution protein	within coordinates
Rr398556	regulatory region 398556	475 bp upstream
Rr601358	regulatory region 601358	513 bp proximal
Tssr43767	transcription start site region 43767	145 bp downstream
Tssr43768	transcription start site region 43768	433 bp downstream