rs27576426 SNP Detail

Summary

• ID
  rs27576426
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137874623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCATGTG TCAAAAAACA
  TCCCGTGGAG TCATTTCTTC CCTTCTGCCT TCATGTGGAT CCTGGGGATC CAGCTCACCC
  CATCAGCTTT CAAGGTAAAC ATTATCTAGT GAGCCATGCT GCCTACGGCA GATTTGAAAT
  CAGTTTCTGA TGAGCTCTTT CGAGCTAATA AAAACTTGTG TGTTGTTCAC TTGTCTAACA
  R
  TATCTTTTGT TGCTTCCTCT GTCACGTCAT TTTCCTTCCA TGATGCTCTG TTGATGTCAC
  AGTAGTTGCC TAGCAACCAC TAAAGAGGTG TGTGAGTGTG ACTTCATTGT GCTTCTGAGG
  GACAAGATTT AGCACTAAGT TTGAGAGGTG CACGTAGTCG GTGCCTACCT TGAAGCTTGA
  CAAGAAGATG ATGTTCCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37769262	NES09139822	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27576426					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37769262	NES09139822	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137874623 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Tssr39828	transcription start site region 39828	103 bp upstream
Tssr39829	transcription start site region 39829	118 bp upstream
Tssr39830	transcription start site region 39830	155 bp upstream