rs27576429 SNP Detail

Summary

• ID
  rs27576429
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137873456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGTTCTTT GTGCCACACT GGAGTAACCA GGCTGCCGGT
  GCACATCTGA GTTTGCGGCT AGCACACTTA CCTTTTTGGC AGTAGCTGGA CTGCCAATGA
  R
  AGTGTTCCCA TGGCTTTCGT TTGACTCCTG GCTGCAGGCG AATTTCTGTG CTGCTGGGCT
  AGAATGCAAA GATGTTTTAG ATCTACTAAT CCCCAGCAGG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37769265	NES09139861	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	G	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27576429					SNP	A	G	G	A	G	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37769265	NES09139861	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137873456 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	Intron
Tssr39828	transcription start site region 39828	1270 bp upstream
Tssr39829	transcription start site region 39829	1285 bp upstream
Tssr39830	transcription start site region 39830	1322 bp upstream