rs27576432 SNP Detail

Summary

• ID
  rs27576432
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137873090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGTGTG TCTGAAGACA
  GCGACAGTGT ACTCACATAC ATAAAATAAG TAAATAAATC TTTTAAAAAA ACAAAAGTTT
  TAAGAAGTGT CCCTGGTTAA GACGACACTG TTGCCTGGTA GGACCAGACC CAGGCTTGGA
  CTTCTCTCCC ACACCAGTCT GTGCTGTCCT AGTCTGATGC GCTGGCAACC CCAGGGTTTC
  Y
  AGTCTGGAAA TGCATGTGCA GGTGAATCAG GAGCTCTCAA CTCTGAATTT GGGGACTGAG
  AATGGTGACA TAAACCTTTA GTCCCAGCGG TCAGGAGGCA GAGGCAGGTG GATCACTCCG
  AGTTCAAGGC CAACCCACTC TCCATAGAGT TCCAGGCCAG TCAGTGCTTC GTATTAAGAT
  CTTACGTCAA AAGTCGTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37769268	NES09139877	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C	C			C	C	C	C	T	C
ss45604105	mCV24055330	ABI	CRAMUS_MOUSE	f	SNP		T					C	C
ss147634446	ENSMUSSNP1516149	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27576432					SNP	C	T	T	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37769268	NES09139877	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137873090 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Tssr39828	transcription start site region 39828	1636 bp upstream
Tssr39829	transcription start site region 39829	1651 bp upstream
Tssr39830	transcription start site region 39830	1688 bp upstream