rs27576433 SNP Detail

Summary

• ID
  rs27576433
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137873018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACGTCCTG AGTTCAAGTC
  CCAGCAAGCA CATGGTGGCT CACAACCATC TGTAATGGGA TCTGATGCCC TCTTCTGGTG
  TGTCTGAAGA CAGCGACAGT GTACTCACAT ACATAAAATA AGTAAATAAA TCTTTTAAAA
  AAACAAAAGT TTTAAGAAGT GTCCCTGGTT AAGACGACAC TGTTGCCTGG TAGGACCAGA
  Y
  CCAGGCTTGG ACTTCTCTCC CACACCAGTC TGTGCTGTCC TAGTCTGATG CGCTGGCAAC
  CCCAGGGTTT CCAGTCTGGA AATGCATGTG CAGGTGAATC AGGAGCTCTC AACTCTGAAT
  TTGGGGACTG AGAATGGTGA CATAAACCTT TAGTCCCAGC GGTCAGGAGG CAGAGGCAGG
  TGGATCACTC CGAGTTCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37769269	NES09139876	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27576433					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37769269	NES09139876	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137873018 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	Intron
Tssr39828	transcription start site region 39828	1708 bp upstream
Tssr39829	transcription start site region 39829	1723 bp upstream
Tssr39830	transcription start site region 39830	1760 bp upstream