rs27577739 SNP Detail

Summary

• ID
  rs27577739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137724392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCT CTGGCTGACA AAATAACTGA
  Y
  GTTTTCATAA AAAACTGTCA TGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37770076	NES09144376	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T		T	T	T		C	C	T	T		T
ss45630717	mCV22546102	ABI	CRAMUS_MOUSE	f	SNP		C	T					C
ss147628470	ENSMUSSNP5246569	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss321369540	CHEV_4_137552996	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27577739					SNP	C	C	T	T	T	C	T	C	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770076	NES09144376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137724392 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Rr86598	regulatory region 86598	409 bp proximal
Rr100351	regulatory region 100351	391 bp distal
Tssr39811	transcription start site region 39811	1244 bp downstream