rs27577743 SNP Detail

Summary

• ID
  rs27577743
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137724205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACAGGA ATTGCATGTA
  AACTTGAAGC TGGAAGCAGG CATCAGATTT GCACTGCAGG ACAACCTTCC CCCCCCCCTC
  CCCCCAGCCA CTTGAAGGAG AAATGGCCAC ACTGATTGGA AATAGTCAAT GGCTGGTCTC
  TAGCTGAGGG GGAGATGGGA TGGCAGGCCT GGAAGGAGAC AGAAAGCTAA CATGAACAGT
  K
  GTAAACGCAA GGAGAGTATG CTGAGAGTTT CTTAACAAAC CCGCTGGAAA CTTGTGCTTG
  GTGAAGTCAC AGCTTGAGAA TATTTGTCTT GCGGTGTGCT TGGCTCAGCT TCCCCGTTGA
  GGTTGAGGTG ACTCTGTTGA GAATATTGAC AGTGGTCATC CTTTCTCTGG CTGACAAAAT
  AACTGACGTT TTCATAAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770080	NES09144370	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	T	T	T	T	T	T	T	T	T	T	G	T
ss147628449	ENSMUSSNP3812390	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27577743					SNP	T	T	G	G	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770080	NES09144370	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137724205 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Rr86598	regulatory region 86598	596 bp proximal
Rr100351	regulatory region 100351	204 bp distal
Tssr39811	transcription start site region 39811	1057 bp downstream