rs27577746 SNP Detail

Summary

• ID
  rs27577746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137724046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAACTCCA CTGCCTTACA
  GGGTGTGTGT GGGTACAGTT GCTGCAAATT AGTTAGCTTA AGCAGTGTAT TAGAAAATGT
  GTTGGAAGGC GTTGCATGGC CAGGTGTCCT TCATTCGTAC TGAGTGTTCA CGTGTTCGTC
  GAAATGCAAG GTGTGTTGAA AACACAGGAA TTGCATGTAA ACTTGAAGCT GGAAGCAGGC
  R
  TCAGATTTGC ACTGCAGGAC AACCTTCCCC CCCCCCTCCC CCCAGCCACT TGAAGGAGAA
  ATGGCCACAC TGATTGGAAA TAGTCAATGG CTGGTCTCTA GCTGAGGGGG AGATGGGATG
  GCAGGCCTGG AAGGAGACAG AAAGCTAACA TGAACAGTTG TAAACGCAAG GAGAGTATGC
  TGAGAGTTTC TTAACAAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770083	NES09144367	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27577746					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770083	NES09144367	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137724046 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Rr86598	regulatory region 86598	755 bp proximal
Rr100351	regulatory region 100351	45 bp distal
Tssr39810	transcription start site region 39810	1918 bp downstream
Tssr39811	transcription start site region 39811	898 bp downstream
Tssr44155	transcription start site region 44155	1976 bp upstream