rs27577747 SNP Detail

Summary

• ID
  rs27577747
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137723977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCAGTAAG TCAGTGCCGT
  TGAAGCACTT GGAGTTAGAG CACAGAGCTG GCGTTGGCTC TTCCCATGGC TTAACTCCAC
  TGCCTTACAG GGTGTGTGTG GGTACAGTTG CTGCAAATTA GTTAGCTTAA GCAGTGTATT
  AGAAAATGTG TTGGAAGGCG TTGCATGGCC AGGTGTCCTT CATTCGTACT GAGTGTTCAC
  R
  TGTTCGTCGA AATGCAAGGT GTGTTGAAAA CACAGGAATT GCATGTAAAC TTGAAGCTGG
  AAGCAGGCAT CAGATTTGCA CTGCAGGACA ACCTTCCCCC CCCCCTCCCC CCAGCCACTT
  GAAGGAGAAA TGGCCACACT GATTGGAAAT AGTCAATGGC TGGTCTCTAG CTGAGGGGGA
  GATGGGATGG CAGGCCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770084	NES09144366	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27577747					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770084	NES09144366	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137723977 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Gm70263	predicted gene, 70263	1939 bp upstream
Rr86598	regulatory region 86598	824 bp proximal
Rr100351	regulatory region 100351	within coordinates
Tssr39810	transcription start site region 39810	1849 bp downstream
Tssr39811	transcription start site region 39811	829 bp downstream
Tssr44155	transcription start site region 44155	1907 bp upstream