rs27577748 SNP Detail

Summary

• ID
  rs27577748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137723974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGTGCAGT AAGTCAGTGC
  CGTTGAAGCA CTTGGAGTTA GAGCACAGAG CTGGCGTTGG CTCTTCCCAT GGCTTAACTC
  CACTGCCTTA CAGGGTGTGT GTGGGTACAG TTGCTGCAAA TTAGTTAGCT TAAGCAGTGT
  ATTAGAAAAT GTGTTGGAAG GCGTTGCATG GCCAGGTGTC CTTCATTCGT ACTGAGTGTT
  Y
  ACGTGTTCGT CGAAATGCAA GGTGTGTTGA AAACACAGGA ATTGCATGTA AACTTGAAGC
  TGGAAGCAGG CATCAGATTT GCACTGCAGG ACAACCTTCC CCCCCCCCTC CCCCCAGCCA
  CTTGAAGGAG AAATGGCCAC ACTGATTGGA AATAGTCAAT GGCTGGTCTC TAGCTGAGGG
  GGAGATGGGA TGGCAGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770085	NES09144365	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27577748					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770085	NES09144365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137723974 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Gm70263	predicted gene, 70263	1936 bp upstream
Rr86598	regulatory region 86598	827 bp proximal
Rr100351	regulatory region 100351	within coordinates
Tssr39810	transcription start site region 39810	1846 bp downstream
Tssr39811	transcription start site region 39811	826 bp downstream
Tssr44155	transcription start site region 44155	1904 bp upstream