TATGCAGACA CCTGCGTGCA GTAAGTCAGT GCCGTTGAAG CACTTGGAGT TAGAGCACAG AGCTGGCGTT GGCTCTTCCC ATGGCTTAAC TCCACTGCCT TACAGGGTGT GTGTGGGTAC AGTTGCTGCA AATTAGTTAG CTTAAGCAGT GTATTAGAAA ATGTGTTGGA AGGCGTTGCA TGGCCAGGTG TCCTTCATTC K TACTGAGTGT TCACGTGTTC GTCGAAATGC AAGGTGTGTT GAAAACACAG GAATTGCATG TAAACTTGAA GCTGGAAGCA GGCATCAGAT TTGCACTGCA GGACAACCTT CCCCCCCCCC TCCCCCCAGC CACTTGAAGG AGAAATGGCC ACACTGATTG GAAATAGTCA ATGGCTGGTC TCTAGCTGAG GGGGAGATGG K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37770086 | NES09144364 | PERLEGEN | MM_PANEL2 | f | SNP | G | T | T | G | G | G | G | G | G | G | G | G | G | T | G |
ss147628438 | ENSMUSSNP7093367 | ENSEMBL | ENSEMBL_Sanger | f | SNP | T | G | |||||||||||||
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27577749 | SNP | G | T | T | G | G | G | G | G | G | G | G | G | G | T | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37770086 | NES09144364 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr4:137723962 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Eif4g3 | eukaryotic translation initiation factor 4 gamma, 3 | within coordinates | ||||||
Gm70263 | predicted gene, 70263 | 1924 bp upstream | ||||||
Rr86598 | regulatory region 86598 | 839 bp proximal | ||||||
Rr100351 | regulatory region 100351 | within coordinates | ||||||
Tssr39810 | transcription start site region 39810 | 1834 bp downstream | ||||||
Tssr39811 | transcription start site region 39811 | 814 bp downstream | ||||||
Tssr44155 | transcription start site region 44155 | 1892 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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