rs27577751 SNP Detail

Summary

• ID
  rs27577751
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137723828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGGAAGC GTGGGCTACG
  GCCGGCTCAG AACGCAGCAG CGGGAAAATG TTGTCACCTG GTACTGGAAG AGGTCAGAAA
  CCCAGTAGAG CAACTCTGCT TTTCAAACTG CAGGGCATGT GGGAATTTGG GTTTTATGCA
  GACACCTGCG TGCAGTAAGT CAGTGCCGTT GAAGCACTTG GAGTTAGAGC ACAGAGCTGG
  Y
  GTTGGCTCTT CCCATGGCTT AACTCCACTG CCTTACAGGG TGTGTGTGGG TACAGTTGCT
  GCAAATTAGT TAGCTTAAGC AGTGTATTAG AAAATGTGTT GGAAGGCGTT GCATGGCCAG
  GTGTCCTTCA TTCGTACTGA GTGTTCACGT GTTCGTCGAA ATGCAAGGTG TGTTGAAAAC
  ACAGGAATTG CATGTAAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37770088	NES09144362	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27577751					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770088	NES09144362	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137723828 () rs orientation: forward

Symbol	Name	Function Class
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Gm70263	predicted gene, 70263	1790 bp upstream
Rr86598	regulatory region 86598	973 bp proximal
Rr100351	regulatory region 100351	within coordinates
Tssr39810	transcription start site region 39810	1700 bp downstream
Tssr39811	transcription start site region 39811	680 bp downstream
Tssr44155	transcription start site region 44155	1758 bp upstream