rs27577753 SNP Detail

Summary

• ID
  rs27577753
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137723529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCT GCTTGGAGGT TCTATTTTGC
  Y
  CCATGTCATG GCGGCTGACA TTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37770090	NES09144360	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C	T	T	T		C		C	T	T		C
ss147628424	ENSMUSSNP1047307	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T					T					C
ss321369534	CHEV_4_137552133	CHEVERUD	SCREENING_POP	f	SNP											T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27577753					SNP	C	C	T	T	T	C	C	T	T	T	T	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770090	NES09144360	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137723529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15142	CpG island 15142	1732 bp distal
Eif4g3	eukaryotic translation initiation factor 4 gamma, 3	within coordinates
Gm70263	predicted gene, 70263	1491 bp upstream
Rr86598	regulatory region 86598	1272 bp proximal
Rr100351	regulatory region 100351	within coordinates
Tssr39810	transcription start site region 39810	1401 bp downstream
Tssr39811	transcription start site region 39811	381 bp downstream
Tssr44155	transcription start site region 44155	1459 bp upstream