rs27577997 SNP Detail

Summary

• ID
  rs27577997
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134071192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAC CTCTGCTTAC CCGCCAGCCA
  M
  CGCGGGGTTC GGAGTGTTCT TACTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37762041	NES09160605	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C	C		C	A		C	C	A		C
ss45697358	mCV22575497	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					A	C
ss147525958	ENSMUSSNP5989767	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss321346959	CHEV_4_133899796	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27577997					SNP	C	C	C	C	C	C	C	A	C	A	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762041	NES09160605	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134071192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	93 bp distal
Rr601645	regulatory region 601645	162 bp distal
Rr601646	regulatory region 601646	926 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	within coordinates
Tssr39548	transcription start site region 39548	727 bp downstream
Tssr39549	transcription start site region 39549	670 bp downstream
Tssr39550	transcription start site region 39550	375 bp downstream
Tssr39551	transcription start site region 39551	346 bp downstream
Tssr39552	transcription start site region 39552	273 bp downstream
Tssr39553	transcription start site region 39553	201 bp downstream
Tssr39554	transcription start site region 39554	177 bp downstream
Tssr39555	transcription start site region 39555	1 bp upstream
Tssr39556	transcription start site region 39556	121 bp upstream