rs27577998 SNP Detail

Summary

• ID
  rs27577998
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134071178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGGGTGGA GGAGCAGGGG ACCATCATAG AACAAGGTCC
  CAAGACTCAC CTCCCCAATA CCACACCCAC CCCCCTGTAA CATTGGCTGC ATACCTCTGC
  W
  TACCCGCCAG CCAACGCGGG GTTCGGAGTG TTCTTACTTG TTCTGGAAAC AGCAGACTAG
  CAATAACTCC CAGAGACTGG CCCAGTGCCC CCTCCCCCG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37762042	NES09160604	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A		T	A	T	T		T	A	A	T		A
ss45699340	mCV22575498	ABI	CRAMUS_MOUSE	f	SNP	T	T	A					T		A
ss147525953	ENSMUSSNP4241972	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							A
ss321346958	CHEV_4_133899782	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27577998					SNP	T	T	A	A	A	A	A	T	T	A	T	T	A	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762042	NES09160604	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134071178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	79 bp distal
Rr601645	regulatory region 601645	148 bp distal
Rr601646	regulatory region 601646	940 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	within coordinates
Tssr39548	transcription start site region 39548	713 bp downstream
Tssr39549	transcription start site region 39549	656 bp downstream
Tssr39550	transcription start site region 39550	361 bp downstream
Tssr39551	transcription start site region 39551	332 bp downstream
Tssr39552	transcription start site region 39552	259 bp downstream
Tssr39553	transcription start site region 39553	187 bp downstream
Tssr39554	transcription start site region 39554	163 bp downstream
Tssr39555	transcription start site region 39555	15 bp upstream
Tssr39556	transcription start site region 39556	135 bp upstream