rs27577999 SNP Detail

Summary

• ID
  rs27577999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134070979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACGTAGGGTG CCTGGAACCC CGCCTTCACT CCAGCACTTT
  GATCCCGGGC AGCCCTGAGG TGGGGAGGCC CGGTGTCCTT GGGTGCGCTG AGCTATGGTC
  Y
  TTAGCTGCTG TTTGAGCCAG AACTCTGCTC AGAGCTCTTT CTCTGAGCTC GACCGGACTG
  ACTGCCCTTT GGCTAGTTCG CAAAGCTCTC AGCCTGGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37762043	NES09160603	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		T	C	T	T		T	C	C	T		C
ss45647620	mCV22575505	ABI	CRAMUS_MOUSE	f	SNP		T	C					T
ss147525948	ENSMUSSNP6688239	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss321346957	CHEV_4_133899583	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27577999					SNP	T	T	C	C	C	C	C	T	T	C	T	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762043	NES09160603	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134070979 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	within coordinates
Rr601645	regulatory region 601645	within coordinates
Rr601646	regulatory region 601646	1139 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	within coordinates
Tssr39548	transcription start site region 39548	514 bp downstream
Tssr39549	transcription start site region 39549	457 bp downstream
Tssr39550	transcription start site region 39550	162 bp downstream
Tssr39551	transcription start site region 39551	133 bp downstream
Tssr39552	transcription start site region 39552	60 bp downstream
Tssr39553	transcription start site region 39553	within coordinates
Tssr39554	transcription start site region 39554	15 bp upstream
Tssr39555	transcription start site region 39555	214 bp upstream
Tssr39556	transcription start site region 39556	334 bp upstream