rs27578001 SNP Detail

Summary

• ID
  rs27578001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134070584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGATAAAGCG GGCGGGCGCG GGGCGCAGCG GCAGGGCCGG
  AGCGGAAGGT GGAAGGTGAC TGCGAGCTGC CATCGTCCCG CGCGCAACTT CGAGGGCGCA
  Y
  CGAGAGAGGC GGCATGCAGA CTATGGACAA GCAGAACCTG CTGGAGAGCA CGCGCGGAGC
  CCGGTAAGTT CAAGCCCCAA GGGGCGGGAA GCTGGGCAGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37762045	NES09160601	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27578001					SNP	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762045	NES09160601	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134070584 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	within coordinates
Rr601645	regulatory region 601645	within coordinates
Rr601646	regulatory region 601646	1534 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	within coordinates
Tssr39548	transcription start site region 39548	119 bp downstream
Tssr39549	transcription start site region 39549	62 bp downstream
Tssr39550	transcription start site region 39550	220 bp upstream
Tssr39551	transcription start site region 39551	250 bp upstream
Tssr39552	transcription start site region 39552	325 bp upstream
Tssr39553	transcription start site region 39553	359 bp upstream
Tssr39554	transcription start site region 39554	410 bp upstream
Tssr39555	transcription start site region 39555	609 bp upstream
Tssr39556	transcription start site region 39556	729 bp upstream