rs27578002 SNP Detail

Summary

• ID
  rs27578002
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134070314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT TCTCTTTGCT CCAGGCAAAA
  R
  CTTTAGGTCG CAGTCCGGCT CAGCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37762046	NES09160600	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	A		G	G	G	A		G
ss147525938	ENSMUSSNP888697	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss321346956	CHEV_4_133898918	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27578002					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762046	NES09160600	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134070314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	within coordinates
Rr601645	regulatory region 601645	within coordinates
Rr601646	regulatory region 601646	1804 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	178 bp upstream
Tssr39548	transcription start site region 39548	140 bp upstream
Tssr39549	transcription start site region 39549	195 bp upstream
Tssr39550	transcription start site region 39550	490 bp upstream
Tssr39551	transcription start site region 39551	520 bp upstream
Tssr39552	transcription start site region 39552	595 bp upstream
Tssr39553	transcription start site region 39553	629 bp upstream
Tssr39554	transcription start site region 39554	680 bp upstream
Tssr39555	transcription start site region 39555	879 bp upstream
Tssr39556	transcription start site region 39556	999 bp upstream