rs27578003 SNP Detail

Summary

• ID
  rs27578003
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134069876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCAGGAGG AACTTTCAAA ATGGGTCTGT AACTCCAACA
  GCCCTATTGT GGGGCACCGC CCCAGCAAGG GGGAGGCAGA TCCTCTCTGG CTGCAGCCAC
  S
  GGGCAAGAGC ACCAGCCCCC TGTCACTCCC TTGCACCAAG AATCCAATTC CAGGAAGTCT
  CTCTTCCCCG CAGTAGCCCC CATCAAAGCT GCTAGTCACA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37762047	NES09160620	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27578003					SNP	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762047	NES09160620	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134069876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	357 bp proximal
Rr601645	regulatory region 601645	126 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	616 bp upstream
Tssr39548	transcription start site region 39548	578 bp upstream
Tssr39549	transcription start site region 39549	633 bp upstream
Tssr39550	transcription start site region 39550	928 bp upstream
Tssr39551	transcription start site region 39551	958 bp upstream
Tssr39552	transcription start site region 39552	1033 bp upstream
Tssr39553	transcription start site region 39553	1067 bp upstream
Tssr39554	transcription start site region 39554	1118 bp upstream
Tssr39555	transcription start site region 39555	1317 bp upstream
Tssr39556	transcription start site region 39556	1437 bp upstream