rs27578005 SNP Detail

Summary

• ID
  rs27578005
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134069605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGAGAAGA GAAGAGAAGA GAAGAGAAGA GAAGAGAAGA
  GAAGAGAAGA GAAGAGAAGA GAAGAGAAGA GAAAAGTGTG GGGTGTGGTC TTCTCCGTTG
  M
  AGGTCCCACA TCATCTCTTA GGAATTTGCT GGGCTTCTGG GGTACACAGT CTCCTGCAGT
  GTGTCTGTTC TCCCCAGATA GCATCGGTTA AAAAGACAGG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37762049	NES09160618	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	C	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27578005					SNP	A	A	A	A	A	A	A	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37762049	NES09160618	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134069605 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15035	CpG island 15035	628 bp proximal
Rr601645	regulatory region 601645	397 bp proximal
Slc30a2	solute carrier family 30 (zinc transporter), member 2	887 bp upstream
Tssr39548	transcription start site region 39548	849 bp upstream
Tssr39549	transcription start site region 39549	904 bp upstream
Tssr39550	transcription start site region 39550	1199 bp upstream
Tssr39551	transcription start site region 39551	1229 bp upstream
Tssr39552	transcription start site region 39552	1304 bp upstream
Tssr39553	transcription start site region 39553	1338 bp upstream
Tssr39554	transcription start site region 39554	1389 bp upstream
Tssr39555	transcription start site region 39555	1588 bp upstream
Tssr39556	transcription start site region 39556	1708 bp upstream