rs27585777 SNP Detail

Summary

• ID
  rs27585777
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:124608516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACTTATC CGTTCCTGCT
  AGTGTGTCCC TGCCGGCCCA GCTTTCTGCA GCAAGCCCCG GGCAAGCCAG CTGTCTCTCA
  ACCTCAGCCT ACAGGATTCT TGCAGGCTTC TTAGAGACAG CCAGCTTTCA ACGCGGAGGC
  AGCGCTCCTT CAGACCCCCA GCCAGCAGGG GGAAGCGTAG CCACGGTCGC GGATAGCACC
  S
  GCTTGCTCTC TTCGTGGTGT TCCTTTTTTC TTGAGTCCCC CAAGACACTT CCGGGACACG
  CGGAACTTTG GTGCAGCCGG ATGCTGCGCG CTGAGACGCT GGCTGAAAGG CGGCAGGCGG
  TGTTTCCGGC AGTGTTAGTG GTCCGCCTTG AAACGCCGTG GCCAAGGGAA AATGGAGACA
  ATTTTAGAGC AGCAACGGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37739324	NES09183984	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	C	C	G	C	C	G		G	C	G	G		C
ss321294522	CHEV_4_124391967	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27585777					SNP	C	G	G	C	C	G	C	C	G	G	G	C	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37739324	NES09183984	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124608516 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14778	CpG island 14778	within coordinates
Rr367691	regulatory region 367691	within coordinates
Rr599340	regulatory region 599340	1687 bp distal
Rr599341	regulatory region 599341	521 bp distal
Rr599342	regulatory region 599342	within coordinates
Rr599343	regulatory region 599343	246 bp distal
Sf3a3	splicing factor 3a, subunit 3	mRNA-UTR
Tssr38902	transcription start site region 38902	86 bp upstream