rs27585781 SNP Detail

Summary

• ID
  rs27585781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:124608247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAG AATTACAGAG
  AATCAGAAGT TAACCTGTGC TGAACAGCAA GCATATCATT GCTTGAGTGT ACCACGTTTT
  TCTTAAAGAC TCCTCTGCCA ATAAACAAAG GTTGTGTTCA AATATGTATG AGTTTTATTA
  AGAACAAACC CACCACCATC TCCACTTTAC TGACAAACAC ACTAAAGTCC AGACAAGGGG
  R
  AAACATCACC AGAGGTCACA CACTGAAAAC TACTGCTGCT TCCAGTTCCC CTTTCCGTTC
  TGTATCCTTC AACTTATCCG TTCCTGCTAG TGTGTCCCTG CCGGCCCAGC TTTCTGCAGC
  AAGCCCCGGG CAAGCCAGCT GTCTCTCAAC CTCAGCCTAC AGGATTCTTG CAGGCTTCTT
  AGAGACAGCC AGCTTTCAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37739328	NES09183980	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	A	A	A	G		A	A	G	A		A
ss321294521	CHEV_4_124391698	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27585781					SNP	A	G	A	A	A	A	A	A	A	G	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37739328	NES09183980	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124608247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14778	CpG island 14778	76 bp proximal
Rr367691	regulatory region 367691	101 bp upstream
Rr599340	regulatory region 599340	1418 bp distal
Rr599341	regulatory region 599341	252 bp distal
Rr599342	regulatory region 599342	within coordinates
Rr599343	regulatory region 599343	2 bp proximal
Sf3a3	splicing factor 3a, subunit 3	Intron
Tssr38902	transcription start site region 38902	355 bp upstream