rs27589992 SNP Detail

Summary

• ID
  rs27589992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130554557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTTCATT CTTGTTGGGT
  TTTGGTTTTG GTTTTTGGAG ACAGGTCTCT CTGTGTAGCA TTGGCTGTCC TGGAACTCAC
  TCTGTAGACC AGGCTGGCTT TGAACACAGA GATCCCCCTG CCTCTGCCTC CCGAATGCTA
  GGGTTAAAGG CGTGTGCCAC TAGTACTCGG CTGATGTGTT TATTCTTGTG TCCAGGTGGT
  R
  GCTTTTCCCA GCCTCAGGTT CTGGGCCTGG GTGCTCCAAA TCTGATTCCC CCAACTGCAC
  AGGGGGATGA TCACGTGTCC CCTGTGGAGG GGGAAAGGGC TCCGTGAGGA ACTCAGCATG
  GTGTTTTTGA AGACAGCATT GGGACAAGAG CAGGACCCGG AGACCTCACG TTTCTGTGGC
  CTGGATCACT CAGTGCGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37753316	NES09165060	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27589992					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753316	NES09165060	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130554557 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	933 bp upstream
Gm69250	predicted gene, 69250	1707 bp upstream
Rr600596	regulatory region 600596	1399 bp proximal
Rr600597	regulatory region 600597	1718 bp proximal
Sdc3	syndecan 3	928 bp downstream
Tssr39293	transcription start site region 39293	1368 bp downstream
Tssr39294	transcription start site region 39294	1208 bp downstream
Tssr39295	transcription start site region 39295	1043 bp downstream
Tssr39296	transcription start site region 39296	1015 bp downstream