rs27589993 SNP Detail

Summary

• ID
  rs27589993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130554328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCATGGA GGCACTTCCC
  CAACTGAAGC TCCTTTCTCT GTGATAACTC CAGCCTGTGT CCAGTTGACA CACAAAACCA
  GCCAGTCCAA TGACTGTGTG CAGTTGGGCA GGGGCTTGCT GTTCATCCCC TCAGGGAGAC
  TCCAGCTTCA GGCTGCAAAG AGAATCTTGC CCTAAAGGAT ATAGGAACTG GAGCCATGCA
  Y
  GAGGAGAGAC TGTGCCCTTG GGGTCTGATA TGTTCATTCT TGTTGGGTTT TGGTTTTGGT
  TTTTGGAGAC AGGTCTCTCT GTGTAGCATT GGCTGTCCTG GAACTCACTC TGTAGACCAG
  GCTGGCTTTG AACACAGAGA TCCCCCTGCC TCTGCCTCCC GAATGCTAGG GTTAAAGGCG
  TGTGCCACTA GTACTCGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37753317	NES09165072	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27589993					SNP	C	C	C	C	C	C	T	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753317	NES09165072	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130554328 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	704 bp upstream
Gm69250	predicted gene, 69250	1936 bp upstream
Rr600596	regulatory region 600596	1628 bp proximal
Rr600597	regulatory region 600597	1947 bp proximal
Sdc3	syndecan 3	699 bp downstream
Tssr39293	transcription start site region 39293	1139 bp downstream
Tssr39294	transcription start site region 39294	979 bp downstream
Tssr39295	transcription start site region 39295	814 bp downstream
Tssr39296	transcription start site region 39296	786 bp downstream