rs27589996 SNP Detail

Summary

• ID
  rs27589996
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130553697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGCGCT CGTACACCCC
  TGGCTTGGGA AGGACAGGGC TTGCTTTGTT TTGTTTTCTG TTAGTTTTTG TTTTTTAACA
  TTTCCCTGTG CTGTGCCCAT TTATAAGAGG AAATAAAATT AAGCTGAAAG ATGTCGTGTG
  GTGGCCCACG TGTGATATGA GTAGGGGACT GGCTTGGGAG GGACAGCCCA CACTCACCTT
  K
  CGTCCCAGCC ACGGTCCCTC TGGGGAGATG GAGAATGACC CAGGGCAATA GGACAGCATC
  CACACGGGAA CCTTGAGGTA ACCGTGGTTG GTTGAAAGAG GTGAAATGGT GTATATGACT
  GTCTTAGTCA GGGTTTCTAT TCCTGCACAA AACATCATGA CCAAGAAGCA AGCTGGGAAG
  GAAAGGGTTT ATTCAGCTTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37753320	NES09165124	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27589996					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753320	NES09165124	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130553697 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	73 bp upstream
Sdc3	syndecan 3	68 bp downstream
Tssr39293	transcription start site region 39293	508 bp downstream
Tssr39294	transcription start site region 39294	348 bp downstream
Tssr39295	transcription start site region 39295	183 bp downstream
Tssr39296	transcription start site region 39296	155 bp downstream