rs27589997 SNP Detail

Summary

• ID
  rs27589997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130553630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAGAGA AGGAGGAGAG
  GGTCAGATGG ATAAAGATAA AGATACCAAG GCCTGGTCCA TCCTTACCAT GGGCGCTCGT
  ACACCCCTGG CTTGGGAAGG ACAGGGCTTG CTTTGTTTTG TTTTCTGTTA GTTTTTGTTT
  TTTAACATTT CCCTGTGCTG TGCCCATTTA TAAGAGGAAA TAAAATTAAG CTGAAAGATG
  Y
  CGTGTGGTGG CCCACGTGTG ATATGAGTAG GGGACTGGCT TGGGAGGGAC AGCCCACACT
  CACCTTGCGT CCCAGCCACG GTCCCTCTGG GGAGATGGAG AATGACCCAG GGCAATAGGA
  CAGCATCCAC ACGGGAACCT TGAGGTAACC GTGGTTGGTT GAAAGAGGTG AAATGGTGTA
  TATGACTGTC TTAGTCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37753321	NES09165123	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C		C	T	T	C		T
ss321318880	CHEV_4_130382234	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27589997					SNP	T	T	T	T	T	T	T	T	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37753321	NES09165123	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130553630 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	6 bp upstream
Sdc3	syndecan 3	1 bp downstream
Tssr39293	transcription start site region 39293	441 bp downstream
Tssr39294	transcription start site region 39294	281 bp downstream
Tssr39295	transcription start site region 39295	116 bp downstream
Tssr39296	transcription start site region 39296	88 bp downstream